Prevention: Orchards favoring high humidity often have rust problems. Encouraging air movement by planting on wider spacings (22' between rows), hedging, or selective pruning may help reduce canopy humidity. Microsprinklers and solid set sprinklers may increase canopy humidity since evaporation of sprayed water may occur. Sanitation (leaf mowing, breakdown) should be employed to reduce overwintering inoculum.
Treatment: In orchards that have a history of rust, a two spray fungicide program should be used to reduce disease and clean up the orchard. The first application should be applied 5 weeks after petal fall and followed up with a 2nd application at 10 weeks post petal fall. DMI (FRAC Group 3) or strobilurins (FRAC Group 11) provide good to excellent control. Broad spectrum fungicides such as sulfur and topsin provide a good, cheap control and also allow an option for fungicide rotation. More information on fungicide efficacy can be found here.
Applications of zinc sulfate (20-40 lbs/acre) applied in late October/early November should be made to help reduce overwintering populations of rust. The zinc will hasten leaf fall, and prevent the rust inoculum from increasing. In orchards of severe infestation, applying a low rate of nitrogen to the surface leaf debris will help speed up the natural degradation of the leaves. A similar treatment is used to reduce overwintering populations of apple scab in Michigan.

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